Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099821
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 832
[wgsID] => 515
[fwdFile] => IS_35536_R1.fastq.gz
[fwdMd5] => 8d9a8d1bf572da8199f6e157df32a157
[revFile] => IS_35536_R2.fastq.gz
[revMd5] => c361268c2985a9fea2f276ad0ad7cdb6
[rawReads] => 940914710
[FastqRCS] => 1
[enaExperiment] => ERX13611284
[enaRun] => ERR14209064
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1726
[wgsID] => 515
[refGenome] => cf4
[dateSubmitted] => 2024-12-27 09:40:07
[dateCompleted] => 2024-12-28 02:15:05
[bamMd5] => 5f0dff6bedac1262fc6d8794d4076048
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 745155778
[primaryReads] => 737756116
[mappedReads] => 744264179
[primaryMapped] => 736864517
[pairedReads] => 725857074
[meanInsertSize] => 362.73
[meanReadDepth] => 29.94
[variantsCalled] => 6001654
[variantsFiltered] => 5719806
[snpCount] => 4042071
[snpHom] => 1999966
[snpHet] => 2042105
[indelCount] => 1685635
[insHom] => 366075
[delHom] => 492794
[insHet] => 384648
[delHet] => 471827
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ25796748
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25796748/IS_35536-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242