Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099835
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 846
                    [wgsID] => 529
                    [fwdFile] => IS_41398_R1.fastq.gz
                    [fwdMd5] => 082e040f587337cbe550e3cffd844a36
                    [revFile] => IS_41398_R2.fastq.gz
                    [revMd5] => 00ccb8af1094d0468fc53d99e2bef09b
                    [rawReads] => 1239717816
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611286
                    [enaRun] => ERR14209066
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1728
                    [wgsID] => 529
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-12-27 09:40:54
                    [dateCompleted] => 2024-12-28 05:19:55
                    [bamMd5] => 693011d51b1183f219592964f853773a
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 732867976
                    [primaryReads] => 723383560
                    [mappedReads] => 731627053
                    [primaryMapped] => 722142637
                    [pairedReads] => 709035134
                    [meanInsertSize] => 354.14
                    [meanReadDepth] => 29.14
                    [variantsCalled] => 5972971
                    [variantsFiltered] => 5706680
                    [snpCount] => 4027833
                    [snpHom] => 2012656
                    [snpHet] => 2015177
                    [indelCount] => 1686773
                    [insHom] => 371230
                    [delHom] => 498877
                    [insHet] => 380857
                    [delHet] => 465326
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ25796750
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25796750/IS_41398-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242