Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099863
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 874
                    [wgsID] => 557
                    [fwdFile] => IS_41708_R1.fastq.gz
                    [fwdMd5] => b0581768640acaa33ff176040950f130
                    [revFile] => IS_41708_R2.fastq.gz
                    [revMd5] => 72a9372734b6beca0b105533cff2bad5
                    [rawReads] => 1094190880
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611291
                    [enaRun] => ERR14209071
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1732
                    [wgsID] => 557
                    [refGenome] => cf4
                    [dateSubmitted] => 2025-01-02 11:47:50
                    [dateCompleted] => 2025-01-04 14:44:17
                    [bamMd5] => 13a1ad584c6ec87daee0f62c9df8da7a
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 930271251
                    [primaryReads] => 922874056
                    [mappedReads] => 929207173
                    [primaryMapped] => 921809978
                    [pairedReads] => 906365338
                    [meanInsertSize] => 393.82
                    [meanReadDepth] => 35.64
                    [variantsCalled] => 6100090
                    [variantsFiltered] => 5797547
                    [snpCount] => 4089583
                    [snpHom] => 2007171
                    [snpHet] => 2082412
                    [indelCount] => 1716543
                    [insHom] => 371025
                    [delHom] => 497401
                    [insHet] => 396718
                    [delHet] => 483560
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ25842052
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ258/ERZ25842052/IS_41708-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242