Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099863
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 874
[wgsID] => 557
[fwdFile] => IS_41708_R1.fastq.gz
[fwdMd5] => b0581768640acaa33ff176040950f130
[revFile] => IS_41708_R2.fastq.gz
[revMd5] => 72a9372734b6beca0b105533cff2bad5
[rawReads] => 1094190880
[FastqRCS] => 1
[enaExperiment] => ERX13611291
[enaRun] => ERR14209071
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1732
[wgsID] => 557
[refGenome] => cf4
[dateSubmitted] => 2025-01-02 11:47:50
[dateCompleted] => 2025-01-04 14:44:17
[bamMd5] => 13a1ad584c6ec87daee0f62c9df8da7a
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 930271251
[primaryReads] => 922874056
[mappedReads] => 929207173
[primaryMapped] => 921809978
[pairedReads] => 906365338
[meanInsertSize] => 393.82
[meanReadDepth] => 35.64
[variantsCalled] => 6100090
[variantsFiltered] => 5797547
[snpCount] => 4089583
[snpHom] => 2007171
[snpHet] => 2082412
[indelCount] => 1716543
[insHom] => 371025
[delHom] => 497401
[insHet] => 396718
[delHet] => 483560
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ25842052
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ258/ERZ25842052/IS_41708-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242