Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099864
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 875
                    [wgsID] => 558
                    [fwdFile] => IS_41709_R1.fastq.gz
                    [fwdMd5] => c76172d26dcc038e28bda6c45555cfb5
                    [revFile] => IS_41709_R2.fastq.gz
                    [revMd5] => 852a451a176b891b638dae5c5b3a2ad2
                    [rawReads] => 989312488
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611292
                    [enaRun] => ERR14209072
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1733
                    [wgsID] => 558
                    [refGenome] => cf4
                    [dateSubmitted] => 2025-01-02 11:48:17
                    [dateCompleted] => 2025-01-04 14:44:17
                    [bamMd5] => 720ed4694f0b6d23ec02980b101777f7
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 812324897
                    [primaryReads] => 805606247
                    [mappedReads] => 811424941
                    [primaryMapped] => 804706291
                    [pairedReads] => 790912232
                    [meanInsertSize] => 398.80
                    [meanReadDepth] => 33.05
                    [variantsCalled] => 6061217
                    [variantsFiltered] => 5748091
                    [snpCount] => 4057365
                    [snpHom] => 2023352
                    [snpHet] => 2034013
                    [indelCount] => 1698848
                    [insHom] => 369231
                    [delHom] => 496512
                    [insHet] => 389832
                    [delHet] => 474198
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ25842053
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ258/ERZ25842053/IS_41709-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242