Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189968
[wgsExptID] => 7
[Batch] => Oxford_4
[SeqLaboratory] => Wellcome Trust Centre for Human Genetics
[Platform] => Illumina
[InstrumentModel] => HiSeq4000
[ReadType] => 100bp:PAIRED:20X
[LibraryPrep] => WTCHG, PCR FREE
[PcrFree] => Y
[SampleCount] => 2
[DateSubmitted] =>
[FastqID] => 461
[wgsID] => 104
[fwdFile] => ISP_21897_R1.fastq.gz
[fwdMd5] => 6ac0a0642745415b7f235202304b0709
[revFile] => ISP_21897_R2.fastq.gz
[revMd5] => 39d6a6a13d018e91becaaa86df341293
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10825748
[enaRun] => ERR11417902
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 163
[wgsID] => 104
[refGenome] => cf4
[dateSubmitted] => 2022-04-06 14:37:00
[dateCompleted] => 2022-04-07 15:02:00
[bamMd5] => 6207294d8702a6358dd3d40348e69598
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 677879308
[primaryReads] =>
[mappedReads] => 672244960
[primaryMapped] =>
[pairedReads] => 658162366
[meanInsertSize] => 260.54
[meanReadDepth] => 22.63
[variantsCalled] => 6255476
[variantsFiltered] => 5969772
[snpCount] => 4301727
[snpHom] =>
[snpHet] =>
[indelCount] => 1677479
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21790200
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21790200/ISP_21897-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242