Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189983
[wgsExptID] => 20
[Batch] => Edinburgh_10
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 7
[DateSubmitted] => 2018-10-23
[FastqID] => 198
[wgsID] => 42
[fwdFile] => ISP_27785_R1.fastq.gz
[fwdMd5] => b6b4c8e4c4ab2052cae46cc969021e8b
[revFile] => ISP_27785_R2.fastq.gz
[revMd5] => 6aaf14845aa19e161396b3919d0c2dc6
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10644417
[enaRun] => ERR11217526
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 78
[wgsID] => 42
[refGenome] => cf4
[dateSubmitted] => 2022-04-06 14:38:00
[dateCompleted] => 2022-04-07 10:05:00
[bamMd5] => 83e132f07a244b8973142af52895f844
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 907637198
[primaryReads] =>
[mappedReads] => 809049209
[primaryMapped] =>
[pairedReads] => 777365986
[meanInsertSize] => 460.43
[meanReadDepth] => 40.81
[variantsCalled] => 6640494
[variantsFiltered] => 6262359
[snpCount] => 4374223
[snpHom] => 1703658
[snpHet] => 2670565
[indelCount] => 1900209
[insHom] => 263919
[delHom] => 373598
[insHet] => 586634
[delHet] => 722007
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21736959
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21736959/ISP_27785-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242