Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190220
[wgsExptID] => 12
[Batch] => Edinburgh_2
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 36
[DateSubmitted] =>
[FastqID] => 199
[wgsID] => 145
[fwdFile] => ISP_28162_R1.fastq.gz
[fwdMd5] => dcd255a1a536efd67f09271748b00044
[revFile] => ISP_28162_R2.fastq.gz
[revMd5] => c40c099bca6b7bab8fab5470df4f8ab6
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10686608
[enaRun] => ERR11278908
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 52
[wgsID] => 145
[refGenome] => cf4
[dateSubmitted] => 2022-04-06 14:38:00
[dateCompleted] => 2022-04-07 09:58:00
[bamMd5] => f551addeb761fb29100fd73825f644af
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 936156221
[primaryReads] =>
[mappedReads] => 883519362
[primaryMapped] =>
[pairedReads] => 867391948
[meanInsertSize] => 440.91
[meanReadDepth] => 42.59
[variantsCalled] => 6712564
[variantsFiltered] => 6325593
[snpCount] => 4420261
[snpHom] =>
[snpHet] =>
[indelCount] => 1918098
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21783004
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21783004/ISP_28162-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242