Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190240
                    [wgsExptID] => 13
                    [Batch] => Edinburgh_3
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 26
                    [DateSubmitted] => 
                    [FastqID] => 201
                    [wgsID] => 209
                    [fwdFile] => IW_32555_R1.fastq.gz
                    [fwdMd5] => 6c445d612286ed2dccb19aa7f3650160
                    [revFile] => IW_32555_R2.fastq.gz
                    [revMd5] => 750ec2d77cd7b0180e42f056df62ad8a
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10679356
                    [enaRun] => ERR11271786
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 354
                    [wgsID] => 209
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-03-20 18:09:00
                    [dateCompleted] => 2023-03-21 14:26:00
                    [bamMd5] => 7f1370e94194c7f767c824a5affd5dc9
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1044070793
                    [primaryReads] => 
                    [mappedReads] => 1042044654
                    [primaryMapped] => 
                    [pairedReads] => 1022360210
                    [meanInsertSize] => 494.21
                    [meanReadDepth] => 48.73
                    [variantsCalled] => 6000632
                    [variantsFiltered] => 5606404
                    [snpCount] => 3892928
                    [snpHom] => 2195093
                    [snpHet] => 1697835
                    [indelCount] => 1722609
                    [insHom] => 348379
                    [delHom] => 480522
                    [insHet] => 413982
                    [delHet] => 508897
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21375575
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375575/IW_32555-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242