Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190240
[wgsExptID] => 13
[Batch] => Edinburgh_3
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 26
[DateSubmitted] =>
[FastqID] => 201
[wgsID] => 209
[fwdFile] => IW_32555_R1.fastq.gz
[fwdMd5] => 6c445d612286ed2dccb19aa7f3650160
[revFile] => IW_32555_R2.fastq.gz
[revMd5] => 750ec2d77cd7b0180e42f056df62ad8a
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10679356
[enaRun] => ERR11271786
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 354
[wgsID] => 209
[refGenome] => cf4
[dateSubmitted] => 2023-03-20 18:09:00
[dateCompleted] => 2023-03-21 14:26:00
[bamMd5] => 7f1370e94194c7f767c824a5affd5dc9
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1044070793
[primaryReads] =>
[mappedReads] => 1042044654
[primaryMapped] =>
[pairedReads] => 1022360210
[meanInsertSize] => 494.21
[meanReadDepth] => 48.73
[variantsCalled] => 6000632
[variantsFiltered] => 5606404
[snpCount] => 3892928
[snpHom] => 2195093
[snpHet] => 1697835
[indelCount] => 1722609
[insHom] => 348379
[delHom] => 480522
[insHet] => 413982
[delHet] => 508897
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21375575
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375575/IW_32555-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242