Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190242
[wgsExptID] => 13
[Batch] => Edinburgh_3
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 26
[DateSubmitted] =>
[FastqID] => 203
[wgsID] => 213
[fwdFile] => IW_32559_R1.fastq.gz
[fwdMd5] => 16a809849e819e25182125405257f336
[revFile] => IW_32559_R2.fastq.gz
[revMd5] => 4dbd19a71efee153c61ce28db492da00
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10679359
[enaRun] => ERR11271789
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 358
[wgsID] => 213
[refGenome] => cf4
[dateSubmitted] => 2023-03-20 17:30:00
[dateCompleted] => 2023-03-21 14:15:00
[bamMd5] => 46793e6675942e7923274f114ee2c6fe
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 983499865
[primaryReads] =>
[mappedReads] => 981682732
[primaryMapped] =>
[pairedReads] => 963883780
[meanInsertSize] => 465.57
[meanReadDepth] => 48.48
[variantsCalled] => 6104390
[variantsFiltered] => 5719363
[snpCount] => 3977946
[snpHom] => 2120705
[snpHet] => 1857241
[indelCount] => 1750845
[insHom] => 337147
[delHom] => 466704
[insHet] => 439871
[delHet] => 539482
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21375579
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375579/IW_32559-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242