Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190244
[wgsExptID] => 13
[Batch] => Edinburgh_3
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 26
[DateSubmitted] =>
[FastqID] => 205
[wgsID] => 217
[fwdFile] => IW_32563_R1.fastq.gz
[fwdMd5] => e55d44e07e910fbab74e476f8b6d46ba
[revFile] => IW_32563_R2.fastq.gz
[revMd5] => 6bd0efea6563411c052d083ae02126b6
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10679363
[enaRun] => ERR11271793
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 362
[wgsID] => 217
[refGenome] => cf4
[dateSubmitted] => 2023-03-20 17:31:00
[dateCompleted] => 2023-03-21 13:44:00
[bamMd5] => da4aac274c2a2b06888e7bd5e96bd7e6
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1022481250
[primaryReads] =>
[mappedReads] => 1020498126
[primaryMapped] =>
[pairedReads] => 1000491248
[meanInsertSize] => 465.79
[meanReadDepth] => 47.03
[variantsCalled] => 5940884
[variantsFiltered] => 5555549
[snpCount] => 3864846
[snpHom] => 2196277
[snpHet] => 1668569
[indelCount] => 1699247
[insHom] => 351242
[delHom] => 483960
[insHet] => 399402
[delHet] => 491879
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21375583
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375583/IW_32563-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242