Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190115
                    [wgsExptID] => 19
                    [Batch] => Edinburgh_9
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 17
                    [DateSubmitted] => 2018-04-26
                    [FastqID] => 211
                    [wgsID] => 76
                    [fwdFile] => KE_34857_R1.fastq.gz
                    [fwdMd5] => a53633c5fa956ffee5b1925e4e332750
                    [revFile] => KE_34857_R2.fastq.gz
                    [revMd5] => 9f44ba2e842b44290d4fa05b194bd533
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10664707
                    [enaRun] => ERR11256498
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 67
                    [wgsID] => 76
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-01-10 11:52:00
                    [dateCompleted] => 2022-01-11 04:41:00
                    [bamMd5] => 1530e900439734d1e1549e3064808ac5
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 989714968
                    [primaryReads] => 
                    [mappedReads] => 986439951
                    [primaryMapped] => 
                    [pairedReads] => 967279840
                    [meanInsertSize] => 425.79
                    [meanReadDepth] => 45.76
                    [variantsCalled] => 6454899
                    [variantsFiltered] => 6046939
                    [snpCount] => 4213558
                    [snpHom] => 1899570
                    [snpHet] => 2313988
                    [indelCount] => 1845218
                    [insHom] => 298002
                    [delHom] => 416202
                    [insHet] => 530443
                    [delHet] => 642115
                    [genomicsDB] => cf4-utility
                    [varsity] => 0
                    [enaAnalysis] => ERZ21775561
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21775561/KE_34857-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242