Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA11296825
                    [wgsExptID] => 23
                    [Batch] => CRUKCI_1
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina DNA Prep
                    [PcrFree] => N
                    [SampleCount] => 23
                    [DateSubmitted] => 2021-06-11
                    [FastqID] => 633
                    [wgsID] => 10
                    [fwdFile] => KE_35867_R1.fastq.gz
                    [fwdMd5] => 025f69bd6cc235d0d401eada49e62087
                    [revFile] => KE_35867_R2.fastq.gz
                    [revMd5] => 85200d65cbc60e42add88d0c91108744
                    [rawReads] => 1021012730
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10830378
                    [enaRun] => ERR11423070
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 48
                    [wgsID] => 10
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-07-11 16:13:00
                    [dateCompleted] => 2023-07-12 11:58:00
                    [bamMd5] => 3d62dcb025d6d246d4218a00830eb34f
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 931774458
                    [primaryReads] => 
                    [mappedReads] => 930724473
                    [primaryMapped] => 
                    [pairedReads] => 909459000
                    [meanInsertSize] => 324.18
                    [meanReadDepth] => 44.65
                    [variantsCalled] => 6171371
                    [variantsFiltered] => 5799322
                    [snpCount] => 4051658
                    [snpHom] => 2077270
                    [snpHet] => 1974388
                    [indelCount] => 1756922
                    [insHom] => 345082
                    [delHom] => 480390
                    [insHet] => 435645
                    [delHet] => 529055
                    [genomicsDB] => cf4-utility
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659494
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659494/KE_35867-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242