Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190246
[wgsExptID] => 13
[Batch] => Edinburgh_3
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 26
[DateSubmitted] =>
[FastqID] => 214
[wgsID] => 215
[fwdFile] => LE_32561_R1.fastq.gz
[fwdMd5] => aa7e2d5205beab55550a959f58971a70
[revFile] => LE_32561_R2.fastq.gz
[revMd5] => f81beaad4e6b6c60fcfefc2604eddb80
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10679361
[enaRun] => ERR11271791
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 249
[wgsID] => 215
[refGenome] => cf4
[dateSubmitted] => 2022-11-22 07:58:00
[dateCompleted] => 2022-11-23 02:41:00
[bamMd5] => 1df0f248354d61655ffbac10f81adbc4
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 982915810
[primaryReads] =>
[mappedReads] => 980766437
[primaryMapped] =>
[pairedReads] => 962664592
[meanInsertSize] => 480.24
[meanReadDepth] => 48.30
[variantsCalled] => 6242288
[variantsFiltered] => 5865993
[snpCount] => 4083638
[snpHom] => 1900640
[snpHet] => 2182998
[indelCount] => 1792831
[insHom] => 301946
[delHom] => 421890
[insHet] => 497776
[delHet] => 608245
[genomicsDB] => cf4-working
[varsity] => 0
[enaAnalysis] => ERZ21375581
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375581/LE_32561-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242