Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA11296809
[wgsExptID] => 23
[Batch] => CRUKCI_1
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina DNA Prep
[PcrFree] => N
[SampleCount] => 23
[DateSubmitted] => 2021-06-11
[FastqID] => 628
[wgsID] => 5
[fwdFile] => LH_34852_R1.fastq.gz
[fwdMd5] => 5f509c3de24cf9f69e2db548b51418da
[revFile] => LH_34852_R2.fastq.gz
[revMd5] => 64f9a61a6872f1f6b4ceb7ca9fd206a3
[rawReads] => 1107782978
[FastqRCS] => 1
[enaExperiment] => ERX10830373
[enaRun] => ERR11423065
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 31
[wgsID] => 5
[refGenome] => cf4
[dateSubmitted] => 2023-07-11 14:54:00
[dateCompleted] => 2023-07-12 11:45:00
[bamMd5] => 3b8f20253adde173a883af76877af3cb
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 869134768
[primaryReads] =>
[mappedReads] => 867683737
[primaryMapped] =>
[pairedReads] => 845930940
[meanInsertSize] => 356.34
[meanReadDepth] => 41.78
[variantsCalled] => 6692688
[variantsFiltered] => 6304064
[snpCount] => 4428340
[snpHom] => 1711295
[snpHet] => 2717045
[indelCount] => 1887624
[insHom] => 274588
[delHom] => 389999
[insHet] => 572734
[delHet] => 696195
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21659495
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659495/LH_34852-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242