Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA11296809
                    [wgsExptID] => 23
                    [Batch] => CRUKCI_1
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina DNA Prep
                    [PcrFree] => N
                    [SampleCount] => 23
                    [DateSubmitted] => 2021-06-11
                    [FastqID] => 628
                    [wgsID] => 5
                    [fwdFile] => LH_34852_R1.fastq.gz
                    [fwdMd5] => 5f509c3de24cf9f69e2db548b51418da
                    [revFile] => LH_34852_R2.fastq.gz
                    [revMd5] => 64f9a61a6872f1f6b4ceb7ca9fd206a3
                    [rawReads] => 1107782978
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10830373
                    [enaRun] => ERR11423065
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 31
                    [wgsID] => 5
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-07-11 14:54:00
                    [dateCompleted] => 2023-07-12 11:45:00
                    [bamMd5] => 3b8f20253adde173a883af76877af3cb
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 869134768
                    [primaryReads] => 
                    [mappedReads] => 867683737
                    [primaryMapped] => 
                    [pairedReads] => 845930940
                    [meanInsertSize] => 356.34
                    [meanReadDepth] => 41.78
                    [variantsCalled] => 6692688
                    [variantsFiltered] => 6304064
                    [snpCount] => 4428340
                    [snpHom] => 1711295
                    [snpHet] => 2717045
                    [indelCount] => 1887624
                    [insHom] => 274588
                    [delHom] => 389999
                    [insHet] => 572734
                    [delHet] => 696195
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659495
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659495/LH_34852-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242