Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMN40922114
[wgsExptID] => 0
[Batch] => Downloaded
[SeqLaboratory] => Various
[Platform] => Various
[InstrumentModel] => Various
[ReadType] =>
[LibraryPrep] =>
[PcrFree] =>
[SampleCount] =>
[DateSubmitted] =>
[FastqID] => 879
[wgsID] => 561
[fwdFile] =>
[fwdMd5] =>
[revFile] =>
[revMd5] =>
[rawReads] => 909775710
[FastqRCS] => 1
[enaExperiment] => SRX24216838
[enaRun] => SRR28618806
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1754
[wgsID] => 561
[refGenome] => cf4
[dateSubmitted] => 2025-02-20 10:05:43
[dateCompleted] => 2025-02-21 00:40:04
[bamMd5] => 001d7b5646cb8310caba764463c8c0ec
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 408238990
[primaryReads] => 405672721
[mappedReads] => 407448170
[primaryMapped] => 404881901
[pairedReads] => 396272970
[meanInsertSize] => 327.66
[meanReadDepth] => 19.06
[variantsCalled] => 6630843
[variantsFiltered] => 6321593
[snpCount] => 4496934
[snpHom] => 1740809
[snpHet] => 2756125
[indelCount] => 1834837
[insHom] => 315653
[delHom] => 433134
[insHet] => 509669
[delHet] => 616865
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] =>
[enaBam] =>
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
|---|
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242
