Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMN15626064
[wgsExptID] => 0
[Batch] => Downloaded
[SeqLaboratory] => Various
[Platform] => Various
[InstrumentModel] => Various
[ReadType] =>
[LibraryPrep] =>
[PcrFree] =>
[SampleCount] =>
[DateSubmitted] =>
[FastqID] => 878
[wgsID] => 562
[fwdFile] =>
[fwdMd5] =>
[revFile] =>
[revMd5] =>
[rawReads] => 1686744404
[FastqRCS] => 1
[enaExperiment] => SRX8830183
[enaRun] => SRR12330100
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1755
[wgsID] => 562
[refGenome] => cf4
[dateSubmitted] => 2025-02-25 14:08:28
[dateCompleted] => 2025-02-27 19:28:25
[bamMd5] => c2674e99da899f209c076ef2a7e38548
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 397570602
[primaryReads] => 395347796
[mappedReads] => 397440505
[primaryMapped] => 395217699
[pairedReads] => 389963690
[meanInsertSize] => 344.03
[meanReadDepth] => 19.02
[variantsCalled] => 6101554
[variantsFiltered] => 5817775
[snpCount] => 4064994
[snpHom] => 2012000
[snpHet] => 2052994
[indelCount] => 1761532
[insHom] => 319361
[delHom] => 443906
[insHet] => 457229
[delHet] => 569492
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] =>
[enaBam] =>
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
|---|
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242
