Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190247
                    [wgsExptID] => 13
                    [Batch] => Edinburgh_3
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 26
                    [DateSubmitted] => 
                    [FastqID] => 217
                    [wgsID] => 194
                    [fwdFile] => LMU_13284_R1.fastq.gz
                    [fwdMd5] => cada3b5f7e662cf764a7b90b42b2dd3c
                    [revFile] => LMU_13284_R2.fastq.gz
                    [revMd5] => 06a61a12db23b84edccfb168f2b164f7
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10682114
                    [enaRun] => ERR11274544
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 339
                    [wgsID] => 194
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-03-21 15:05:00
                    [dateCompleted] => 2023-03-22 12:11:00
                    [bamMd5] => 0a704e72cfc057022a90f2d08bd8f02d
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 980123087
                    [primaryReads] => 
                    [mappedReads] => 977931361
                    [primaryMapped] => 
                    [pairedReads] => 957710832
                    [meanInsertSize] => 497.55
                    [meanReadDepth] => 46.39
                    [variantsCalled] => 6554251
                    [variantsFiltered] => 6154947
                    [snpCount] => 4298031
                    [snpHom] => 1828631
                    [snpHet] => 2469400
                    [indelCount] => 1868415
                    [insHom] => 284206
                    [delHom] => 399017
                    [insHet] => 549876
                    [delHet] => 677075
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21375561
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375561/LMU_13284-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242