Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189989
[wgsExptID] => 21
[Batch] => Edinburgh_11
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 5
[DateSubmitted] => 2018-11-13
[FastqID] => 220
[wgsID] => 36
[fwdFile] => LR_29693_R1.fastq.gz
[fwdMd5] => 4e741191ede8e2ead238f64455a7a882
[revFile] => LR_29693_R2.fastq.gz
[revMd5] => 8a0e2ebf947412a77437ccc77868dd25
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10641005
[enaRun] => ERR11213957
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 84
[wgsID] => 36
[refGenome] => cf4
[dateSubmitted] => 2022-10-06 12:46:00
[dateCompleted] => 2022-10-07 05:03:00
[bamMd5] => a44f1bd1031543405fccdeb2c27cb78d
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 861942624
[primaryReads] =>
[mappedReads] => 852884666
[primaryMapped] =>
[pairedReads] => 829979106
[meanInsertSize] => 432.57
[meanReadDepth] => 42.50
[variantsCalled] => 6588959
[variantsFiltered] => 6188332
[snpCount] => 4312359
[snpHom] => 1811045
[snpHet] => 2501314
[indelCount] => 1887836
[insHom] => 279276
[delHom] => 395481
[insHet] => 561810
[delHet] => 694254
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21736965
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21736965/LR_29693-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242