Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190249
                    [wgsExptID] => 13
                    [Batch] => Edinburgh_3
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 26
                    [DateSubmitted] => 
                    [FastqID] => 222
                    [wgsID] => 218
                    [fwdFile] => LR_32564_R1.fastq.gz
                    [fwdMd5] => 14d6f2d3d19725f5605cd490cd8a1835
                    [revFile] => LR_32564_R2.fastq.gz
                    [revMd5] => e51edd94c55422006c9b1aac81c2b1ad
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10679364
                    [enaRun] => ERR11271794
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 363
                    [wgsID] => 218
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-03-17 10:37:00
                    [dateCompleted] => 2023-03-19 02:07:00
                    [bamMd5] => d46a94fe17615141281245e1d33ecba3
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1011586175
                    [primaryReads] => 
                    [mappedReads] => 1009494847
                    [primaryMapped] => 
                    [pairedReads] => 989567650
                    [meanInsertSize] => 482.83
                    [meanReadDepth] => 45.43
                    [variantsCalled] => 6820540
                    [variantsFiltered] => 6411666
                    [snpCount] => 4486884
                    [snpHom] => 1555751
                    [snpHet] => 2931133
                    [indelCount] => 1937793
                    [insHom] => 233695
                    [delHom] => 334987
                    [insHet] => 633981
                    [delHet] => 784344
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21375584
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375584/LR_32564-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242