Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA11296807
                    [wgsExptID] => 23
                    [Batch] => CRUKCI_1
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina DNA Prep
                    [PcrFree] => N
                    [SampleCount] => 23
                    [DateSubmitted] => 2021-06-11
                    [FastqID] => 631
                    [wgsID] => 8
                    [fwdFile] => LR_35523_R1.fastq.gz
                    [fwdMd5] => b833406951548b7e13403e14b6ac8546
                    [revFile] => LR_35523_R2.fastq.gz
                    [revMd5] => a73d5d525b8791167754428ddc0257db
                    [rawReads] => 990425016
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10830376
                    [enaRun] => ERR11423068
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 29
                    [wgsID] => 8
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-07-11 16:12:00
                    [dateCompleted] => 2023-07-12 12:40:00
                    [bamMd5] => 7e38b99f7ae73c9c955a3f2ab9fd7723
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 955188713
                    [primaryReads] => 
                    [mappedReads] => 953876821
                    [primaryMapped] => 
                    [pairedReads] => 932763014
                    [meanInsertSize] => 352.88
                    [meanReadDepth] => 47.56
                    [variantsCalled] => 6515144
                    [variantsFiltered] => 6151912
                    [snpCount] => 4310052
                    [snpHom] => 1774221
                    [snpHet] => 2535831
                    [indelCount] => 1853143
                    [insHom] => 286050
                    [delHom] => 406046
                    [insHet] => 543744
                    [delHet] => 660510
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659497
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659497/LR_35523-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242