Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190168
[wgsExptID] => 15
[Batch] => Edinburgh_5
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 5
[DateSubmitted] =>
[FastqID] => 223
[wgsID] => 242
[fwdFile] => LRO_32544_R1.fastq.gz
[fwdMd5] => abf8ba9513461d6bf80fb803ba03403b
[revFile] => LRO_32544_R2.fastq.gz
[revMd5] => 101bdb970ab682540e1389e4f94c4d9b
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10679342
[enaRun] => ERR11271772
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 384
[wgsID] => 242
[refGenome] => cf4
[dateSubmitted] => 2023-03-23 09:35:00
[dateCompleted] => 2023-03-24 07:26:00
[bamMd5] => c0767aaa92d8f7524446c779ea468cb4
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 994019079
[primaryReads] =>
[mappedReads] => 990763845
[primaryMapped] =>
[pairedReads] => 970187292
[meanInsertSize] => 495.36
[meanReadDepth] => 45.99
[variantsCalled] => 6565010
[variantsFiltered] => 6184375
[snpCount] => 4349469
[snpHom] => 1813042
[snpHet] => 2536427
[indelCount] => 1846482
[insHom] => 294705
[delHom] => 406498
[insHet] => 535744
[delHet] => 651401
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21517658
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ215/ERZ21517658/Lro_32544-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242