Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190168
                    [wgsExptID] => 15
                    [Batch] => Edinburgh_5
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 5
                    [DateSubmitted] => 
                    [FastqID] => 223
                    [wgsID] => 242
                    [fwdFile] => LRO_32544_R1.fastq.gz
                    [fwdMd5] => abf8ba9513461d6bf80fb803ba03403b
                    [revFile] => LRO_32544_R2.fastq.gz
                    [revMd5] => 101bdb970ab682540e1389e4f94c4d9b
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10679342
                    [enaRun] => ERR11271772
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 384
                    [wgsID] => 242
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-03-23 09:35:00
                    [dateCompleted] => 2023-03-24 07:26:00
                    [bamMd5] => c0767aaa92d8f7524446c779ea468cb4
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 994019079
                    [primaryReads] => 
                    [mappedReads] => 990763845
                    [primaryMapped] => 
                    [pairedReads] => 970187292
                    [meanInsertSize] => 495.36
                    [meanReadDepth] => 45.99
                    [variantsCalled] => 6565010
                    [variantsFiltered] => 6184375
                    [snpCount] => 4349469
                    [snpHom] => 1813042
                    [snpHet] => 2536427
                    [indelCount] => 1846482
                    [insHom] => 294705
                    [delHom] => 406498
                    [insHet] => 535744
                    [delHet] => 651401
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21517658
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ215/ERZ21517658/Lro_32544-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242