Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190250
[wgsExptID] => 13
[Batch] => Edinburgh_3
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 26
[DateSubmitted] =>
[FastqID] => 224
[wgsID] => 203
[fwdFile] => LT_32210_R1.fastq.gz
[fwdMd5] => ca118ce91a16405f4ea4bcab3dae25d9
[revFile] => LT_32210_R2.fastq.gz
[revMd5] => 3934d8e8c964348cd202b96278b3c0f3
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10682123
[enaRun] => ERR11274553
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 250
[wgsID] => 203
[refGenome] => cf4
[dateSubmitted] => 2022-11-22 08:47:00
[dateCompleted] => 2022-11-23 04:19:00
[bamMd5] => eba61e671a9427c1641fe0f310b6af6c
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 945118608
[primaryReads] =>
[mappedReads] => 717419783
[primaryMapped] =>
[pairedReads] => 702960762
[meanInsertSize] => 429.07
[meanReadDepth] => 36.37
[variantsCalled] => 6229994
[variantsFiltered] => 5899580
[snpCount] => 4121325
[snpHom] => 1988902
[snpHet] => 2132423
[indelCount] => 1788101
[insHom] => 317686
[delHom] => 441751
[insHet] => 475192
[delHet] => 588498
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21375569
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ213/ERZ21375569/LT_32210-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242