Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190098
                    [wgsExptID] => 18
                    [Batch] => Edinburgh_8
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 17
                    [DateSubmitted] => 2017-12-12
                    [FastqID] => 225
                    [wgsID] => 297
                    [fwdFile] => MAL_24992_R1.fastq.gz
                    [fwdMd5] => 419a40cfb5e559c7c3029a8b0a4c1db0
                    [revFile] => MAL_24992_R2.fastq.gz
                    [revMd5] => 3554e19208bda0574089902e2bec38d2
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10664694
                    [enaRun] => ERR11256485
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 266
                    [wgsID] => 297
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-11-24 12:34:00
                    [dateCompleted] => 2022-11-25 06:16:00
                    [bamMd5] => 27a5fb6952c58791d1e468788e55fa55
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 908150551
                    [primaryReads] => 
                    [mappedReads] => 875937418
                    [primaryMapped] => 
                    [pairedReads] => 854603500
                    [meanInsertSize] => 480.56
                    [meanReadDepth] => 45.57
                    [variantsCalled] => 6294458
                    [variantsFiltered] => 5943473
                    [snpCount] => 4151921
                    [snpHom] => 1955123
                    [snpHet] => 2196798
                    [indelCount] => 1801886
                    [insHom] => 317870
                    [delHom] => 439665
                    [insHet] => 492287
                    [delHet] => 590582
                    [genomicsDB] => cf4-toy
                    [varsity] => 0
                    [enaAnalysis] => ERZ21778103
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21778103/MAL_24992-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242