Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721097
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 587
[wgsID] => 349
[fwdFile] => MAL_37558_R1.fastq.gz
[fwdMd5] => 499609582e86f965a57781176566d738
[revFile] => MAL_37558_R2.fastq.gz
[revMd5] => 44c53cb6886fb9320f74bda4e53c76f6
[rawReads] => 623416930
[FastqRCS] => 1
[enaExperiment] => ERX10632426
[enaRun] => ERR11203042
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 806
[wgsID] => 349
[refGenome] => cf4
[dateSubmitted] => 2023-06-19 12:38:00
[dateCompleted] => 2023-06-20 00:40:00
[bamMd5] => a2da1bf182bb2a9a745e096e86d4fe6c
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 556507726
[primaryReads] =>
[mappedReads] => 555880215
[primaryMapped] =>
[pairedReads] => 534594136
[meanInsertSize] => 337.73
[meanReadDepth] => 26.37
[variantsCalled] => 6820453
[variantsFiltered] => 6532157
[snpCount] => 4605262
[snpHom] => 1543308
[snpHet] => 3061954
[indelCount] => 1939428
[insHom] => 244666
[delHom] => 352102
[insHet] => 623103
[delHet] => 767054
[genomicsDB] => cf4-toy
[varsity] => 0
[enaAnalysis] => ERZ21817130
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817130/MAL_37558-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242