Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721097
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 587
                    [wgsID] => 349
                    [fwdFile] => MAL_37558_R1.fastq.gz
                    [fwdMd5] => 499609582e86f965a57781176566d738
                    [revFile] => MAL_37558_R2.fastq.gz
                    [revMd5] => 44c53cb6886fb9320f74bda4e53c76f6
                    [rawReads] => 623416930
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632426
                    [enaRun] => ERR11203042
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 806
                    [wgsID] => 349
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-06-19 12:38:00
                    [dateCompleted] => 2023-06-20 00:40:00
                    [bamMd5] => a2da1bf182bb2a9a745e096e86d4fe6c
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 556507726
                    [primaryReads] => 
                    [mappedReads] => 555880215
                    [primaryMapped] => 
                    [pairedReads] => 534594136
                    [meanInsertSize] => 337.73
                    [meanReadDepth] => 26.37
                    [variantsCalled] => 6820453
                    [variantsFiltered] => 6532157
                    [snpCount] => 4605262
                    [snpHom] => 1543308
                    [snpHet] => 3061954
                    [indelCount] => 1939428
                    [insHom] => 244666
                    [delHom] => 352102
                    [insHet] => 623103
                    [delHet] => 767054
                    [genomicsDB] => cf4-toy
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817130
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817130/MAL_37558-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242