Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA11296813
[wgsExptID] => 23
[Batch] => CRUKCI_1
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina DNA Prep
[PcrFree] => N
[SampleCount] => 23
[DateSubmitted] => 2021-06-11
[FastqID] => 626
[wgsID] => 1
[fwdFile] => MHD_34771_R1.fastq.gz
[fwdMd5] => da3dfd79b9f4cabdd4cc08fb058281fc
[revFile] => MHD_34771_R2.fastq.gz
[revMd5] => 1eb4c4fb3b32b353f5ad47b950f43459
[rawReads] => 790005974
[FastqRCS] => 1
[enaExperiment] => ERX10830371
[enaRun] => ERR11423063
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 35
[wgsID] => 1
[refGenome] => cf4
[dateSubmitted] => 2023-07-07 10:57:00
[dateCompleted] => 2023-07-08 04:42:00
[bamMd5] => 43943c6a21e27b0414adff1cd5f6645f
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 694279138
[primaryReads] =>
[mappedReads] => 693412569
[primaryMapped] =>
[pairedReads] => 675920874
[meanInsertSize] => 364.73
[meanReadDepth] => 34.36
[variantsCalled] => 6769656
[variantsFiltered] => 6408668
[snpCount] => 4514061
[snpHom] => 1634826
[snpHet] => 2879235
[indelCount] => 1906910
[insHom] => 260683
[delHom] => 374060
[insHet] => 591937
[delHet] => 726974
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21659498
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659498/MHD_34771-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242