Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189954
[wgsExptID] => 1
[Batch] => AHT
[SeqLaboratory] => Animal Health Trust
[Platform] => Illumina
[InstrumentModel] => MiSeq
[ReadType] =>
[LibraryPrep] => Sonication, NEBnext ultra, 3x amp
[PcrFree] => N
[SampleCount] => 1
[DateSubmitted] =>
[FastqID] => 448
[wgsID] => 86
[fwdFile] => MLHD_1617_R1.fastq.gz
[fwdMd5] => 472c267c9b390937e82bfda4c966bd23
[revFile] => MLHD_1617_R2.fastq.gz
[revMd5] => 3334ded00e886d6d39d1019abff7887f
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10158677
[enaRun] => ERR10691970
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 165
[wgsID] => 86
[refGenome] => cf4
[dateSubmitted] => 2022-10-13 15:35:00
[dateCompleted] => 2022-10-14 09:15:00
[bamMd5] => 0ad4e9be42cd887e40efc88f346f3d85
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 299362868
[primaryReads] =>
[mappedReads] => 295441207
[primaryMapped] =>
[pairedReads] => 264345718
[meanInsertSize] => 353.76
[meanReadDepth] => 17.47
[variantsCalled] => 5541593
[variantsFiltered] => 5349605
[snpCount] => 3989268
[snpHom] =>
[snpHet] =>
[indelCount] => 1364725
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21790187
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21790187/MLHD_1617-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242