Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7189954
                    [wgsExptID] => 1
                    [Batch] => AHT
                    [SeqLaboratory] => Animal Health Trust
                    [Platform] => Illumina
                    [InstrumentModel] => MiSeq
                    [ReadType] => 
                    [LibraryPrep] => Sonication, NEBnext ultra, 3x amp
                    [PcrFree] => N
                    [SampleCount] => 1
                    [DateSubmitted] => 
                    [FastqID] => 448
                    [wgsID] => 86
                    [fwdFile] => MLHD_1617_R1.fastq.gz
                    [fwdMd5] => 472c267c9b390937e82bfda4c966bd23
                    [revFile] => MLHD_1617_R2.fastq.gz
                    [revMd5] => 3334ded00e886d6d39d1019abff7887f
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10158677
                    [enaRun] => ERR10691970
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 165
                    [wgsID] => 86
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-10-13 15:35:00
                    [dateCompleted] => 2022-10-14 09:15:00
                    [bamMd5] => 0ad4e9be42cd887e40efc88f346f3d85
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 299362868
                    [primaryReads] => 
                    [mappedReads] => 295441207
                    [primaryMapped] => 
                    [pairedReads] => 264345718
                    [meanInsertSize] => 353.76
                    [meanReadDepth] => 17.47
                    [variantsCalled] => 5541593
                    [variantsFiltered] => 5349605
                    [snpCount] => 3989268
                    [snpHom] => 
                    [snpHet] => 
                    [indelCount] => 1364725
                    [insHom] => 
                    [delHom] => 
                    [insHet] => 
                    [delHet] => 
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21790187
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21790187/MLHD_1617-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242