Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7189965
                    [wgsExptID] => 5
                    [Batch] => CGS_1
                    [SeqLaboratory] => Cambridge Genomic Services
                    [Platform] => Illumina
                    [InstrumentModel] => NextSeq 500
                    [ReadType] => 150bp:PAIRED:20X
                    [LibraryPrep] => In house, TruSeq DNA LT
                    [PcrFree] => Y
                    [SampleCount] => 2
                    [DateSubmitted] => 
                    [FastqID] => 457
                    [wgsID] => 98
                    [fwdFile] => MS_14809_R1.fastq.gz
                    [fwdMd5] => b5efdb5d06ce6ac610bf1b43eae85e32
                    [revFile] => MS_14809_R2.fastq.gz
                    [revMd5] => aa85c5486c99f47b9fd96fb9354dbb31
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10825744
                    [enaRun] => ERR11417898
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 278
                    [wgsID] => 98
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-02-09 11:00:00
                    [dateCompleted] => 2023-02-09 23:52:00
                    [bamMd5] => 7e8338c28efd97889c98112abbf8e957
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 269472330
                    [primaryReads] => 
                    [mappedReads] => 266786251
                    [primaryMapped] => 
                    [pairedReads] => 256952968
                    [meanInsertSize] => 361.92
                    [meanReadDepth] => 12.68
                    [variantsCalled] => 4850250
                    [variantsFiltered] => 4684052
                    [snpCount] => 3545538
                    [snpHom] => 
                    [snpHet] => 
                    [indelCount] => 1141245
                    [insHom] => 
                    [delHom] => 
                    [insHet] => 
                    [delHet] => 
                    [genomicsDB] => cf4-utility
                    [varsity] => 0
                    [enaAnalysis] => ERZ21790197
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21790197/MS_14809-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242