Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190169
[wgsExptID] => 15
[Batch] => Edinburgh_5
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 5
[DateSubmitted] =>
[FastqID] => 228
[wgsID] => 241
[fwdFile] => MS_22166_R1.fastq.gz
[fwdMd5] => ad29686ab5d0e93fb43dec832d9e010e
[revFile] => MS_22166_R2.fastq.gz
[revMd5] => a8e526514e54cade42e499d771553c5b
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10679341
[enaRun] => ERR11271771
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 383
[wgsID] => 241
[refGenome] => cf4
[dateSubmitted] => 2023-03-23 09:35:00
[dateCompleted] => 2023-03-24 06:00:00
[bamMd5] => 61bc3d7b8dd244266ca95da99f9ca2fe
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 961200666
[primaryReads] =>
[mappedReads] => 958401502
[primaryMapped] =>
[pairedReads] => 938958920
[meanInsertSize] => 452.54
[meanReadDepth] => 44.77
[variantsCalled] => 6127327
[variantsFiltered] => 5781362
[snpCount] => 4047072
[snpHom] => 2098559
[snpHet] => 1948513
[indelCount] => 1743624
[insHom] => 351831
[delHom] => 475184
[insHet] => 428579
[delHet] => 520006
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21517659
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ215/ERZ21517659/MS_22166-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242