Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721091
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 576
[wgsID] => 343
[fwdFile] => MS_35489_R1.fastq.gz
[fwdMd5] => d30daee265094b3baa707eda5ae25f6d
[revFile] => MS_35489_R2.fastq.gz
[revMd5] => 4eff47638125ff52c8609a06ae5c8679
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10632415
[enaRun] => ERR11203031
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 795
[wgsID] => 343
[refGenome] => cf4
[dateSubmitted] => 2023-05-18 13:55:00
[dateCompleted] => 2023-05-18 23:35:00
[bamMd5] => c8b19b64c1fe96bd0fddaf79a960c998
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 411451333
[primaryReads] =>
[mappedReads] => 410803540
[primaryMapped] =>
[pairedReads] => 397191436
[meanInsertSize] => 379.93
[meanReadDepth] => 20.31
[variantsCalled] => 6101752
[variantsFiltered] => 5797341
[snpCount] => 4084291
[snpHom] => 2044439
[snpHet] => 2039852
[indelCount] => 1721323
[insHom] => 344259
[delHom] => 476203
[insHet] => 414242
[delHet] => 514598
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21817136
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817136/MS_35489-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242