Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721092
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 577
[wgsID] => 344
[fwdFile] => MS_35493_R1.fastq.gz
[fwdMd5] => 39439db63194525280631872009ffeea
[revFile] => MS_35493_R2.fastq.gz
[revMd5] => 98ce722e9d4b9dfaf90f5d7e9593061a
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10632416
[enaRun] => ERR11203032
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 796
[wgsID] => 344
[refGenome] => cf4
[dateSubmitted] => 2023-05-18 13:55:00
[dateCompleted] => 2023-05-19 04:52:00
[bamMd5] => 232f955cc210190059b92179e7fec236
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 566223151
[primaryReads] =>
[mappedReads] => 565225170
[primaryMapped] =>
[pairedReads] => 548683020
[meanInsertSize] => 390.54
[meanReadDepth] => 28.35
[variantsCalled] => 6245748
[variantsFiltered] => 5889184
[snpCount] => 4131105
[snpHom] => 2008450
[snpHet] => 2122655
[indelCount] => 1767207
[insHom] => 335473
[delHom] => 465020
[insHet] => 449815
[delHet] => 549636
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21817137
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817137/MS_35493-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242