Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721145
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 584
                    [wgsID] => 398
                    [fwdFile] => MS_37437_R1.fastq.gz
                    [fwdMd5] => 8a66e4ad899636b4ad1166a9d1630edd
                    [revFile] => MS_37437_R2.fastq.gz
                    [revMd5] => 11d2453b8abfec87a6b685236e7a41cf
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632423
                    [enaRun] => ERR11203039
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 803
                    [wgsID] => 398
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-05-18 13:57:00
                    [dateCompleted] => 2023-05-19 02:22:00
                    [bamMd5] => 5dd74de770af0bc180aceecc75957911
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 637539609
                    [primaryReads] => 
                    [mappedReads] => 636591133
                    [primaryMapped] => 
                    [pairedReads] => 618809946
                    [meanInsertSize] => 390.54
                    [meanReadDepth] => 31.50
                    [variantsCalled] => 5938706
                    [variantsFiltered] => 5572119
                    [snpCount] => 3885130
                    [snpHom] => 2261677
                    [snpHet] => 1623453
                    [indelCount] => 1694564
                    [insHom] => 380557
                    [delHom] => 523516
                    [insHet] => 370325
                    [delHet] => 446204
                    [genomicsDB] => cf4-utility
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817141
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817141/MS_37437-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242