Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721146
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 603
[wgsID] => 399
[fwdFile] => MS_38709_R1.fastq.gz
[fwdMd5] => 0441cb145f57a367074c0057317fdc14
[revFile] => MS_38709_R2.fastq.gz
[revMd5] => a910beed0ece295314e0a0dfde1b330e
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10632442
[enaRun] => ERR11203058
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 822
[wgsID] => 399
[refGenome] => cf4
[dateSubmitted] => 2023-05-18 13:57:00
[dateCompleted] => 2023-05-19 06:01:00
[bamMd5] => d1ed7a50ed21fbcc6715068f583e2091
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 889079049
[primaryReads] =>
[mappedReads] => 887724084
[primaryMapped] =>
[pairedReads] => 854824758
[meanInsertSize] => 397.65
[meanReadDepth] => 42.87
[variantsCalled] => 6023941
[variantsFiltered] => 5671600
[snpCount] => 3955974
[snpHom] => 2180409
[snpHet] => 1775565
[indelCount] => 1724242
[insHom] => 361923
[delHom] => 496265
[insHet] => 405583
[delHet] => 490426
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21817142
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817142/MS_38709-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242