Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115790766
                    [wgsExptID] => 29
                    [Batch] => CRUKCI_6
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 36
                    [DateSubmitted] => 2024-06-04
                    [FastqID] => 769
                    [wgsID] => 473
                    [fwdFile] => MSHD_20665_R1.fastq.gz
                    [fwdMd5] => 911a4a6ac3fe367b0ae194ccc45e5d3b
                    [revFile] => MSHD_20665_R2.fastq.gz
                    [revMd5] => 894133cb2ed7f08122f25646e38f9363
                    [rawReads] => 1011409468
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13028963
                    [enaRun] => ERR13658261
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1676
                    [wgsID] => 473
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-08-22 16:13:25
                    [dateCompleted] => 2024-08-23 14:53:02
                    [bamMd5] => 599cf13b324342aeaaaee61f178c2d9b
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 979901518
                    [primaryReads] => 964104148
                    [mappedReads] => 977620879
                    [primaryMapped] => 961823509
                    [pairedReads] => 939608212
                    [meanInsertSize] => 343.77
                    [meanReadDepth] => 42.53
                    [variantsCalled] => 6412860
                    [variantsFiltered] => 6084538
                    [snpCount] => 4324739
                    [snpHom] => 1750248
                    [snpHet] => 2574491
                    [indelCount] => 1770134
                    [insHom] => 310082
                    [delHom] => 424250
                    [insHet] => 482172
                    [delHet] => 591781
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ24876967
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876967/MSHD_20665-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242