Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115790759
[wgsExptID] => 29
[Batch] => CRUKCI_6
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 36
[DateSubmitted] => 2024-06-04
[FastqID] => 753
[wgsID] => 462
[fwdFile] => MSHD_22392_R1.fastq.gz
[fwdMd5] => bb4a41a2a7a31415a414666d866a4fb7
[revFile] => MSHD_22392_R2.fastq.gz
[revMd5] => e7fea31e0f00287d05daec4f114925c0
[rawReads] => 845321538
[FastqRCS] => 1
[enaExperiment] => ERX13028965
[enaRun] => ERR13658263
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1678
[wgsID] => 462
[refGenome] => cf4
[dateSubmitted] => 2024-08-22 16:14:38
[dateCompleted] => 2024-08-23 12:43:02
[bamMd5] => d528d8306afdd2382bbf030c45098388
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 657872449
[primaryReads] => 646386170
[mappedReads] => 655476933
[primaryMapped] => 643990654
[pairedReads] => 626814708
[meanInsertSize] => 333.81
[meanReadDepth] => 28.48
[variantsCalled] => 5941566
[variantsFiltered] => 5687340
[snpCount] => 4048505
[snpHom] => 1959905
[snpHet] => 2088600
[indelCount] => 1646541
[insHom] => 356342
[delHom] => 481355
[insHet] => 374111
[delHet] => 462107
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ24876969
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876969/MSHD_22392-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242