Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115790760
                    [wgsExptID] => 29
                    [Batch] => CRUKCI_6
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 36
                    [DateSubmitted] => 2024-06-04
                    [FastqID] => 754
                    [wgsID] => 463
                    [fwdFile] => MSHD_24315_R1.fastq.gz
                    [fwdMd5] => 28c349368170fb8108fa49cf91dbe505
                    [revFile] => MSHD_24315_R2.fastq.gz
                    [revMd5] => 8259dbe5fa49d1fe4b2be7e439f5f13c
                    [rawReads] => 935315452
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13028966
                    [enaRun] => ERR13658264
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1679
                    [wgsID] => 463
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-08-28 12:14:20
                    [dateCompleted] => 2024-08-29 12:41:35
                    [bamMd5] => fbd4b92dcf2eebbdacf22d7d48aca959
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 640739570
                    [primaryReads] => 629158924
                    [mappedReads] => 637356966
                    [primaryMapped] => 625776320
                    [pairedReads] => 606492948
                    [meanInsertSize] => 338.55
                    [meanReadDepth] => 26.82
                    [variantsCalled] => 6105743
                    [variantsFiltered] => 5838021
                    [snpCount] => 4182348
                    [snpHom] => 1867221
                    [snpHet] => 2315127
                    [indelCount] => 1663662
                    [insHom] => 333488
                    [delHom] => 453389
                    [insHet] => 403745
                    [delHet] => 501225
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ24876970
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876970/MSHD_24315-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242