Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115790762
                    [wgsExptID] => 29
                    [Batch] => CRUKCI_6
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 36
                    [DateSubmitted] => 2024-06-04
                    [FastqID] => 756
                    [wgsID] => 465
                    [fwdFile] => MSHD_24766_R1.fastq.gz
                    [fwdMd5] => 402bc8fef3d4a350972f291090f6b868
                    [revFile] => MSHD_24766_R2.fastq.gz
                    [revMd5] => 2d0318f4a52aac941f738ef39eb3dede
                    [rawReads] => 944747064
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13028968
                    [enaRun] => ERR13658266
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1681
                    [wgsID] => 465
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-08-28 12:15:32
                    [dateCompleted] => 2024-08-29 15:09:51
                    [bamMd5] => 112a41d59b3abb545edcee1c0446a9d8
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 662994296
                    [primaryReads] => 651714666
                    [mappedReads] => 659304433
                    [primaryMapped] => 648024803
                    [pairedReads] => 627405552
                    [meanInsertSize] => 353.76
                    [meanReadDepth] => 29.37
                    [variantsCalled] => 5992823
                    [variantsFiltered] => 5738160
                    [snpCount] => 4098998
                    [snpHom] => 1890830
                    [snpHet] => 2208168
                    [indelCount] => 1647065
                    [insHom] => 339863
                    [delHom] => 459831
                    [insHet] => 390533
                    [delHet] => 484614
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ24876972
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876972/MSHD_24766-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242