Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115790764
                    [wgsExptID] => 29
                    [Batch] => CRUKCI_6
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 36
                    [DateSubmitted] => 2024-06-04
                    [FastqID] => 758
                    [wgsID] => 467
                    [fwdFile] => MSHD_24967_R1.fastq.gz
                    [fwdMd5] => c3c936189087701bfc1a5ef3340ab62c
                    [revFile] => MSHD_24967_R2.fastq.gz
                    [revMd5] => e3bf91f67e201196818639f14b9cfa47
                    [rawReads] => 992308232
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13028970
                    [enaRun] => ERR13658268
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1683
                    [wgsID] => 467
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-08-28 12:17:28
                    [dateCompleted] => 2024-08-29 18:33:47
                    [bamMd5] => 40ffad5149861d2680260f777d189cf1
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 963200197
                    [primaryReads] => 949143876
                    [mappedReads] => 960926929
                    [primaryMapped] => 946870608
                    [pairedReads] => 925475782
                    [meanInsertSize] => 348.27
                    [meanReadDepth] => 43.15
                    [variantsCalled] => 6128153
                    [variantsFiltered] => 5824645
                    [snpCount] => 4132269
                    [snpHom] => 1954680
                    [snpHet] => 2177589
                    [indelCount] => 1701192
                    [insHom] => 352187
                    [delHom] => 473518
                    [insHet] => 407373
                    [delHet] => 499555
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ24876974
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876974/MSHD_24967-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242