Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115790769
                    [wgsExptID] => 29
                    [Batch] => CRUKCI_6
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 36
                    [DateSubmitted] => 2024-06-04
                    [FastqID] => 796
                    [wgsID] => 482
                    [fwdFile] => MSHD_25005_R1.fastq.gz
                    [fwdMd5] => a9367b6a79eabd7bfb091fc36ad012e6
                    [revFile] => MSHD_25005_R2.fastq.gz
                    [revMd5] => dc6cefb545f7ae1194d01731d7eb95f2
                    [rawReads] => 939676110
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13028972
                    [enaRun] => ERR13658270
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1684
                    [wgsID] => 482
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-08-29 16:04:06
                    [dateCompleted] => 2024-08-30 09:29:42
                    [bamMd5] => 56172ed1cc0dd13f22843278359ae90f
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 787058034
                    [primaryReads] => 777039929
                    [mappedReads] => 784275560
                    [primaryMapped] => 774257455
                    [pairedReads] => 755218776
                    [meanInsertSize] => 356.14
                    [meanReadDepth] => 34.70
                    [variantsCalled] => 6156121
                    [variantsFiltered] => 5884322
                    [snpCount] => 4205879
                    [snpHom] => 1820724
                    [snpHet] => 2385155
                    [indelCount] => 1687244
                    [insHom] => 322581
                    [delHom] => 439320
                    [insHet] => 428413
                    [delHet] => 528176
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ24876976
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876976/MSHD_25005-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242