Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115790770
[wgsExptID] => 29
[Batch] => CRUKCI_6
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 36
[DateSubmitted] => 2024-06-04
[FastqID] => 799
[wgsID] => 483
[fwdFile] => MSHD_25034_R1.fastq.gz
[fwdMd5] => e9b392bfd2e72714cf42607a54561ba9
[revFile] => MSHD_25034_R2.fastq.gz
[revMd5] => d55fc1b31b6453b7886e329cb7f9ecb0
[rawReads] => 939832115
[FastqRCS] => 1
[enaExperiment] => ERX13028973
[enaRun] => ERR13658271
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1686
[wgsID] => 483
[refGenome] => cf4
[dateSubmitted] => 2024-08-29 16:04:48
[dateCompleted] => 2024-08-31 01:34:27
[bamMd5] => 6e442d0387ec406cdb2f5f17e0a7d8b1
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 934890036
[primaryReads] => 917221552
[mappedReads] => 932912348
[primaryMapped] => 915243864
[pairedReads] => 892028672
[meanInsertSize] => 347.90
[meanReadDepth] => 40.80
[variantsCalled] => 6118107
[variantsFiltered] => 5825298
[snpCount] => 4128584
[snpHom] => 1908724
[snpHet] => 2219860
[indelCount] => 1705594
[insHom] => 346910
[delHom] => 465797
[insHet] => 415023
[delHet] => 510622
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ24876977
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876977/MSHD_25034-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242