Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721107
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 606
                    [wgsID] => 359
                    [fwdFile] => MSHD_39470_R1.fastq.gz
                    [fwdMd5] => e49020c9cd58d35797290d24ce0819b2
                    [revFile] => MSHD_39470_R2.fastq.gz
                    [revMd5] => a67a7aff6b0958190788801e1a97e525
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632445
                    [enaRun] => ERR11203061
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 825
                    [wgsID] => 359
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-05-19 10:56:00
                    [dateCompleted] => 2023-05-20 04:13:00
                    [bamMd5] => b496c67b843eb6ecd9d954fbc991a956
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 951447744
                    [primaryReads] => 
                    [mappedReads] => 950268174
                    [primaryMapped] => 
                    [pairedReads] => 924995096
                    [meanInsertSize] => 404.08
                    [meanReadDepth] => 46.96
                    [variantsCalled] => 6960567
                    [variantsFiltered] => 6538871
                    [snpCount] => 4596795
                    [snpHom] => 1584345
                    [snpHet] => 3012450
                    [indelCount] => 1955769
                    [insHom] => 247519
                    [delHom] => 353547
                    [insHet] => 636370
                    [delHet] => 770508
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817143
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817143/MSHD_39470-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242