Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721129
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 621
                    [wgsID] => 381
                    [fwdFile] => MSHD_40430_R1.fastq.gz
                    [fwdMd5] => 7a065710f061d15dd932a162ec3725da
                    [revFile] => MSHD_40430_R2.fastq.gz
                    [revMd5] => 2f3b327b52b72db46660155dbf2ae63b
                    [rawReads] => 1350339924
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632460
                    [enaRun] => ERR11203076
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 840
                    [wgsID] => 381
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-05-19 10:56:00
                    [dateCompleted] => 2023-05-20 00:02:00
                    [bamMd5] => 0d4f61322fb3d62e66ad229a338beee4
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 554426903
                    [primaryReads] => 
                    [mappedReads] => 553557854
                    [primaryMapped] => 
                    [pairedReads] => 536079924
                    [meanInsertSize] => 384.31
                    [meanReadDepth] => 26.58
                    [variantsCalled] => 6705818
                    [variantsFiltered] => 6371763
                    [snpCount] => 4481027
                    [snpHom] => 1658999
                    [snpHet] => 2822028
                    [indelCount] => 1902625
                    [insHom] => 264589
                    [delHom] => 377400
                    [insHet] => 586351
                    [delHet] => 719369
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817145
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817145/MSHD_40430-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242