Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721130
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 622
[wgsID] => 382
[fwdFile] => MSHD_40431_R1.fastq.gz
[fwdMd5] => 445dbf733dfe4a15b06ed369ca871e02
[revFile] => MSHD_40431_R2.fastq.gz
[revMd5] => 76732c0d1e54334b8f85b748ec77abe4
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10632461
[enaRun] => ERR11203077
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 841
[wgsID] => 382
[refGenome] => cf4
[dateSubmitted] => 2023-05-19 10:57:00
[dateCompleted] => 2023-05-20 00:34:00
[bamMd5] => 6da70f2e1804cb0c14dfe2991cb5bace
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 632744625
[primaryReads] =>
[mappedReads] => 631674913
[primaryMapped] =>
[pairedReads] => 614632640
[meanInsertSize] => 408.27
[meanReadDepth] => 31.26
[variantsCalled] => 5998168
[variantsFiltered] => 5659624
[snpCount] => 3950422
[snpHom] => 2148509
[snpHet] => 1801913
[indelCount] => 1717433
[insHom] => 359934
[delHom] => 494325
[insHet] => 402701
[delHet] => 489961
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21817146
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817146/MSHD_40431-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242