Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721130
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 622
                    [wgsID] => 382
                    [fwdFile] => MSHD_40431_R1.fastq.gz
                    [fwdMd5] => 445dbf733dfe4a15b06ed369ca871e02
                    [revFile] => MSHD_40431_R2.fastq.gz
                    [revMd5] => 76732c0d1e54334b8f85b748ec77abe4
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632461
                    [enaRun] => ERR11203077
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 841
                    [wgsID] => 382
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-05-19 10:57:00
                    [dateCompleted] => 2023-05-20 00:34:00
                    [bamMd5] => 6da70f2e1804cb0c14dfe2991cb5bace
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 632744625
                    [primaryReads] => 
                    [mappedReads] => 631674913
                    [primaryMapped] => 
                    [pairedReads] => 614632640
                    [meanInsertSize] => 408.27
                    [meanReadDepth] => 31.26
                    [variantsCalled] => 5998168
                    [variantsFiltered] => 5659624
                    [snpCount] => 3950422
                    [snpHom] => 2148509
                    [snpHet] => 1801913
                    [indelCount] => 1717433
                    [insHom] => 359934
                    [delHom] => 494325
                    [insHet] => 402701
                    [delHet] => 489961
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817146
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817146/MSHD_40431-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242