Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721131
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 623
                    [wgsID] => 383
                    [fwdFile] => MSHD_40433_R1.fastq.gz
                    [fwdMd5] => eb1eaf7c1c79baa6521b831313f66958
                    [revFile] => MSHD_40433_R2.fastq.gz
                    [revMd5] => 90d0ae9d883f858301d5732331537cba
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632462
                    [enaRun] => ERR11203078
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 842
                    [wgsID] => 383
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-05-19 10:59:00
                    [dateCompleted] => 2023-05-19 21:02:00
                    [bamMd5] => 9e3f653f9f2e15a29c42c3b6efa4269f
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 367731043
                    [primaryReads] => 
                    [mappedReads] => 366637866
                    [primaryMapped] => 
                    [pairedReads] => 351533644
                    [meanInsertSize] => 296.70
                    [meanReadDepth] => 15.79
                    [variantsCalled] => 6457013
                    [variantsFiltered] => 6197856
                    [snpCount] => 4402367
                    [snpHom] => 1653666
                    [snpHet] => 2748701
                    [indelCount] => 1805297
                    [insHom] => 268903
                    [delHom] => 386426
                    [insHet] => 520003
                    [delHet] => 663976
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817147
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817147/MSHD_40433-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242