Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115790772
[wgsExptID] => 29
[Batch] => CRUKCI_6
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 36
[DateSubmitted] => 2024-06-04
[FastqID] => 802
[wgsID] => 485
[fwdFile] => MSHD_41196_R1.fastq.gz
[fwdMd5] => d3d2971a35ad04fd074291f8c4a91a85
[revFile] => MSHD_41196_R2.fastq.gz
[revMd5] => 9156b68c9e0592861e24e0d2a80736da
[rawReads] => 914519758
[FastqRCS] => 1
[enaExperiment] => ERX13028974
[enaRun] => ERR13658272
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1687
[wgsID] => 485
[refGenome] => cf4
[dateSubmitted] => 2024-08-30 11:29:28
[dateCompleted] => 2024-09-01 10:10:37
[bamMd5] => 48fe5517b911be88750ad77cbcd520d2
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 832639929
[primaryReads] => 821303885
[mappedReads] => 830346315
[primaryMapped] => 819010271
[pairedReads] => 800410290
[meanInsertSize] => 354.66
[meanReadDepth] => 37.79
[variantsCalled] => 6405078
[variantsFiltered] => 6115636
[snpCount] => 4362608
[snpHom] => 1687568
[snpHet] => 2675040
[indelCount] => 1763074
[insHom] => 299364
[delHom] => 412096
[insHet] => 488436
[delHet] => 600113
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ24876978
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876978/MSHD_41196-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242