Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115790773
[wgsExptID] => 29
[Batch] => CRUKCI_6
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 36
[DateSubmitted] => 2024-06-04
[FastqID] => 803
[wgsID] => 486
[fwdFile] => MSHD_41219_R1.fastq.gz
[fwdMd5] => 685830d1d107c827b65aa57b69e40171
[revFile] => MSHD_41219_R2.fastq.gz
[revMd5] => 803dbd75e130d632805f798c9c788903
[rawReads] => 1367948412
[FastqRCS] => 1
[enaExperiment] => ERX13028975
[enaRun] => ERR13658273
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1699
[wgsID] => 486
[refGenome] => cf4
[dateSubmitted] => 2024-09-01 15:26:36
[dateCompleted] => 2024-09-24 16:59:53
[bamMd5] => d2710fbfd94a3a403a95f176ff5aa7eb
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1177863455
[primaryReads] => 1160563902
[mappedReads] => 1174645862
[primaryMapped] => 1157346309
[pairedReads] => 1132987270
[meanInsertSize] => 333.86
[meanReadDepth] => 51.47
[variantsCalled] => 6226498
[variantsFiltered] => 5909707
[snpCount] => 4176117
[snpHom] => 1866637
[snpHet] => 2309480
[indelCount] => 1743208
[insHom] => 334233
[delHom] => 451835
[insHet] => 446389
[delHet] => 546674
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ24876979
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876979/MSHD_41219-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242