Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115790775
                    [wgsExptID] => 29
                    [Batch] => CRUKCI_6
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 36
                    [DateSubmitted] => 2024-06-04
                    [FastqID] => 805
                    [wgsID] => 488
                    [fwdFile] => MSHD_41233_R1.fastq.gz
                    [fwdMd5] => a83911d603c04d8cfd371dd140262a1c
                    [revFile] => MSHD_41233_R2.fastq.gz
                    [revMd5] => f618c3ddbaa1e4d3c5d4a83435d3f32b
                    [rawReads] => 1075236120
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13028977
                    [enaRun] => ERR13658275
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1694
                    [wgsID] => 488
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-09-13 11:41:48
                    [dateCompleted] => 2024-09-14 16:24:33
                    [bamMd5] => 8da2fa285a7aae370ed01f02896e616b
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 943302222
                    [primaryReads] => 929024998
                    [mappedReads] => 940291906
                    [primaryMapped] => 926014682
                    [pairedReads] => 902370530
                    [meanInsertSize] => 351.57
                    [meanReadDepth] => 40.61
                    [variantsCalled] => 6352653
                    [variantsFiltered] => 6049138
                    [snpCount] => 4292873
                    [snpHom] => 1777803
                    [snpHet] => 2515070
                    [indelCount] => 1766282
                    [insHom] => 314993
                    [delHom] => 430479
                    [insHet] => 475880
                    [delHet] => 582849
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ24876981
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876981/MSHD_41233-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242