Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115790778
[wgsExptID] => 29
[Batch] => CRUKCI_6
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 36
[DateSubmitted] => 2024-06-04
[FastqID] => 808
[wgsID] => 491
[fwdFile] => MSHD_41235_R1.fastq.gz
[fwdMd5] => ade41f9985dd803b5d67af58168f1d6d
[revFile] => MSHD_41235_R2.fastq.gz
[revMd5] => 724e9fde708abf93c82539e59bc48983
[rawReads] => 934211560
[FastqRCS] => 1
[enaExperiment] => ERX13028978
[enaRun] => ERR13658276
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1689
[wgsID] => 491
[refGenome] => cf4
[dateSubmitted] => 2024-08-30 11:31:13
[dateCompleted] => 2024-09-01 11:04:31
[bamMd5] => ce5df56f0ebddf3e4bca2dc04245a2ca
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 742958228
[primaryReads] => 732052850
[mappedReads] => 739774183
[primaryMapped] => 728868805
[pairedReads] => 708981680
[meanInsertSize] => 356.85
[meanReadDepth] => 32.92
[variantsCalled] => 6056511
[variantsFiltered] => 5788894
[snpCount] => 4137003
[snpHom] => 1910204
[snpHet] => 2226799
[indelCount] => 1659628
[insHom] => 344308
[delHom] => 463065
[insHet] => 392939
[delHet] => 488180
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ24876982
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876982/MSHD_41235-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242