Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA115790774
                    [wgsExptID] => 29
                    [Batch] => CRUKCI_6
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 36
                    [DateSubmitted] => 2024-06-04
                    [FastqID] => 804
                    [wgsID] => 487
                    [fwdFile] => MSHD_41240_R1.fastq.gz
                    [fwdMd5] => d76d5eef161b1d78d7fed423cc5927e8
                    [revFile] => MSHD_41240_R2.fastq.gz
                    [revMd5] => 58c7f6cc45099bef2ce7d50036db32bc
                    [rawReads] => 873289698
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13028980
                    [enaRun] => ERR13658278
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1691
                    [wgsID] => 487
                    [refGenome] => cf4
                    [dateSubmitted] => 2024-09-12 11:11:52
                    [dateCompleted] => 2024-09-13 08:01:09
                    [bamMd5] => 605a0703009ebeaac68018c87072da44
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 829176696
                    [primaryReads] => 817943382
                    [mappedReads] => 827106079
                    [primaryMapped] => 815872765
                    [pairedReads] => 796486616
                    [meanInsertSize] => 367.93
                    [meanReadDepth] => 37.00
                    [variantsCalled] => 6230463
                    [variantsFiltered] => 5932292
                    [snpCount] => 4223281
                    [snpHom] => 1795462
                    [snpHet] => 2427819
                    [indelCount] => 1718180
                    [insHom] => 318507
                    [delHom] => 434811
                    [insHet] => 447472
                    [delHet] => 551039
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ24876984
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876984/MSHD_41240-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242