Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115790779
[wgsExptID] => 29
[Batch] => CRUKCI_6
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 36
[DateSubmitted] => 2024-06-04
[FastqID] => 809
[wgsID] => 492
[fwdFile] => MSHD_41242_R1.fastq.gz
[fwdMd5] => 8719a96ebab41304f85a877472cc3d87
[revFile] => MSHD_41242_R2.fastq.gz
[revMd5] => d7feeeeafef656a53c3e47b57e2773d7
[rawReads] => 947959066
[FastqRCS] => 1
[enaExperiment] => ERX13028981
[enaRun] => ERR13658279
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1692
[wgsID] => 492
[refGenome] => cf4
[dateSubmitted] => 2024-09-12 11:12:14
[dateCompleted] => 2024-09-13 09:12:10
[bamMd5] => 0ef78115f7b4e3cb5a488f3c134ee378
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 769009566
[primaryReads] => 759309688
[mappedReads] => 766349522
[primaryMapped] => 756649644
[pairedReads] => 739695114
[meanInsertSize] => 346.34
[meanReadDepth] => 33.48
[variantsCalled] => 6395755
[variantsFiltered] => 6139312
[snpCount] => 4382192
[snpHom] => 1643873
[snpHet] => 2738319
[indelCount] => 1767077
[insHom] => 288243
[delHom] => 400240
[insHet] => 500384
[delHet] => 615630
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ24876985
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876985/MSHD_41242-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242