Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA115790780
[wgsExptID] => 29
[Batch] => CRUKCI_6
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 36
[DateSubmitted] => 2024-06-04
[FastqID] => 810
[wgsID] => 493
[fwdFile] => MSHD_41246_R1.fastq.gz
[fwdMd5] => d7e1065989b923ff4eaa7ff7e21af1ce
[revFile] => MSHD_41246_R2.fastq.gz
[revMd5] => 88f0ca9ce249810387f7300e2c8ab112
[rawReads] => 886819954
[FastqRCS] => 1
[enaExperiment] => ERX13028982
[enaRun] => ERR13658280
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1693
[wgsID] => 493
[refGenome] => cf4
[dateSubmitted] => 2024-09-12 11:23:09
[dateCompleted] => 2024-09-13 08:12:38
[bamMd5] => 9e8c415e645bd7bf6a32dc25b1762dd0
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 723379831
[primaryReads] => 711380760
[mappedReads] => 720847992
[primaryMapped] => 708848921
[pairedReads] => 690139670
[meanInsertSize] => 347.91
[meanReadDepth] => 32.69
[variantsCalled] => 5977682
[variantsFiltered] => 5726470
[snpCount] => 4077923
[snpHom] => 1955876
[snpHet] => 2122047
[indelCount] => 1656187
[insHom] => 350005
[delHom] => 472483
[insHet] => 385431
[delHet] => 476542
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ24876986
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ248/ERZ24876986/MSHD_41246-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242